Priming effects in soil size fractions of a podzol Bs horizon after addition of fructose and alanine

It is well known that the addition of easily available substrates to soils can affect microbial activity and thus the mineralization of soil organic carbon (SOC). Up to now, little is known about the processes leading to these priming effects and which fractions of organic matter (OM) are affected. The objectives of this study were to determine if SOC associated with isolated soil size fractions showed different susceptibility to priming effects, whether these pools are easily depleted, or whether the amount of substrate addition affects the extent of priming effects. In an incubation experiment, the effect of the uniformly ¹⁴C‐labeled substrates fructose and alanine on the mineralization of the SOC of a Bs horizon of a Haplic Podzol was investigated. The soil sample was fractionated into the three soil size fractions sand, silt, and clay by a mild sonication followed by sieving and sedimentation. Additionally, nonfractionated soil of the horizon was included in the experiment. Every soil sample received four substrate additions repeated at weekly intervals with 3.325 μg substrate‐C (mg SOC)^–1 and a final addition of 13.3 μg substrate‐C (mg SOC)^–1 after 4 weeks. The respiration was determined hourly and ¹⁴CO₂ was analyzed every 2, 4, and 7 d after the respective substrate addition. After 56 d, between 42% and 58% of the added substrates had been mineralized. Both substrates strongly increased the mineralization of the OM in all fractions (positive priming effects). The priming effects were always higher after the addition of the high substrate dose than during the first 4 weeks when four small doses were added. In general, the priming effects increased with decreasing particle size. Alanine generally caused higher priming effects than fructose in the soil size fractions (up to 280% vs. 231%, respectively). This indicates that alanine serves not only as an energy substrate but also as a N source and, thus, also promotes microbial growth. The strong priming effects in the silt and clay fraction (133% and 125% with fructose, 172% and 168% with alanine) showed, that not only the labile pool of OM is affected, but also a more stable pool characterized by higher ¹⁴C ages. We assume that the stability of the OM in these fractions is not only due to recalcitrance or to interactions with the minerals, but that it may also be caused by a substrate limitation of the degrading microorganisms.     

Shifts in rhizosphere microbial communities and enzyme activity of Poa alpina across an alpine chronosequence

This study quantifies the influence of Poa alpina on the soil microbial community in primary succession of alpine ecosystems, and whether these effects are controlled by the successional stage. Four successional sites representative of four stages of grassland development (initial, 4 years (non-vegetated); pioneer, 20 years; transition, 75 years; mature, 9500 years old) on the Rotmoos glacier foreland, Austria, were sampled. The size, composition and activity of the microbial community in the rhizosphere and bulk soil were characterized using the chloroform-fumigation extraction procedure, phospholipid fatty acid (PLFA) analysis and measurements of the enzymes β-glucosidase, β-xylosidase, N-acetyl-β-glucosaminidase, leucine aminopeptidase, acid phosphatase and sulfatase. The interplay between the host plant and the successional stage was quantified using principal component (PCA) and multidimensional scaling analyses. Correlation analyses were applied to evaluate the relationship between soil factors (C_org, N_t, C/N ratio, pH, ammonium, phosphorus, potassium) and microbial properties in the bulk soil. In the pioneer stage microbial colonization of the rhizosphere of P. alpina was dependent on the reservoir of microbial species in the bulk soil. As a consequence, the rhizosphere and bulk soil were similar in microbial biomass (ninhydrin-reactive nitrogen (NHR-N)), community composition (PLFA), and enzyme activity. In the transition and mature grassland stage, more benign soil conditions stimulated microbial growth (NHR-N, total amount of PLFA, bacterial PLFA, Gram-positive bacteria, Gram-negative bacteria), and microbial diversity (Shannon index H) in the rhizosphere either directly or indirectly through enhanced carbon allocation. In the same period, the rhizosphere microflora shifted from a G⁻ to a more G⁺, and from a fungal to a more bacteria-dominated community. Rhizosphere β-xylosidase, N-acetyl-β-glucosaminidase, and sulfatase activity peaked in the mature grassland soil, whereas rhizosphere leucine aminopeptidase, β-glucosidase, and phosphatase activity were highest in the transition stage, probably because of enhanced carbon and nutrient allocation into the rhizosphere due to better growth conditions. Soil organic matter appeared to be the most important driver of microbial colonization in the bulk soil. The decrease in soil pH and soil C/N ratio mediated the shifts in the soil microbial community composition (bacPLFA, bacPLFA/fungPLFA, G⁻, G⁺/G⁻). The activities of β-glucosidase, β-xylosidase and phosphatase were related to soil ammonium and phosphorus, indicating that higher decomposition rates enhanced the nutrient availability in the bulk soil. We conclude that the major determinants of the microflora vary along the successional gradient: in the pioneer stage the rhizosphere microflora was primarily determined by the harsh soil environment; under more favourable environmental conditions, however, the host plant selected for a specific microbial community that was related to the dynamic interplay between soil properties and carbon supply.     

Genetic characterization of English yew (Taxus baccata L.) populations in Bosnia and Herzegovina

The genetic structures of six populations of English yew (Taxus baccata L.) from different parts of Bosnia and Herzegovina have been characterized by means of isozyme analyses. Using six polymorphic gene loci, a total of 16 alleles have been found with a number of nine alleles, which were in common in all populations. In general, the values of observed heterozygosity reflect a very high level of individual genetic variation. Great differences in the relative allele frequencies lead to relatively high gene pool distances between the populations. Whereas the genetic structures of four populations corresponded essentially with the results of publicized investigations of yew populations from other parts of Europe, two occurrences show great differences. The possible reasons of these peculiarities are discussed. Based on the results of the genetic analyses, different measures for the maintenance and development of the genetic resources are recommended. The conservation management on the population level can prevent the possible loss of genetic adaptation as far as the reasons of genetic differences and their importance are not discovered to a sufficient extent.     

Identification of Mycobacterium avium ssp. paratuberculosis infected dairy herds by environmental sampling

In herds with known prevalence (P) use of environmental sampling (ES) to detect Mycobacterium avium ssp. paratuberculosis (MAP) infected cattle herds was proofed in relation to P. In 31 MAP-infected free stall dairy herds and 15 non-infected herds P was defined by annually repeated whole herd testing by fecal culture (34 877 individual samples). Eight infected herds had a very low (> 0-2%), 14 a low (> 2-5%), four a medium (> 5-10%), and five a high P (> 10%). A mean number of nine environmental samples per herd were collected from the floor of lactating cows, milking, calving and sick cow areas and the crossover to the calf area. After twelve weeks cultivation on HEYM-medium with and without mycobactin positive samples were further characterized by PCR. All non-infected herds (100%) showed negative and 22 (71%) of the infected herds positive results in ES. Nine infected herds with negative ES results had a low P (0.04-4,04%). Proportion of positive ES depended on P and on sampling areas with 53.3% positive results in lactating cow areas and 45.2% in milking areas. For P > 5%, ES in these two areas caused a positive herd status; herds with P < 5% required sampling in the other areas too. The ES method has a herd sensitivity of 87% for dairy herds with P > 2% and provides an efficient tool to determine MAP infection status or herd prevalence.     

Identification of Plakortide E from the Caribbean Sponge Plakortis halichondroides as a Trypanocidal Protease Inhibitor using Bioactivity-Guided Fractionation

In this paper, we report new protease inhibitory activity of plakortide E towards cathepsins and cathepsin-like parasitic proteases. We further report on its anti-parasitic activity against Trypanosoma brucei with an IC₅₀ value of 5 μM and without cytotoxic effects against J774.1 macrophages at 100 μM concentration. Plakortide E was isolated from the sponge Plakortis halichondroides using enzyme assay-guided fractionation and identified by NMR spectroscopy and mass spectrometry. Furthermore, enzyme kinetic studies confirmed plakortide E as a non-competitive, slowly-binding, reversible inhibitor of rhodesain.     

Barley roots are not constrained to large-sized biopores in the subsoil of a deep Haplic Luvisol

Using the profile wall method, we determined the root-length density (RLD) of barley roots growing in large-sized biopores (diameter >2 mm) and in the bulk soil of a Haplic Luvisol down to 200 cm of soil depth. The maximum bulk density in the soil profile (1.52 g?cm^?3) was recorded in the Bt horizon (41–115 cm of soil depth). The proportion of RLD in biopores over the total RLD increased with increasing soil depth down to the 45–75 or 75–105 cm of soil layer but then decreased again in deeper soil. In contrast to earlier investigations, the maximum percentage of RLD in biopores recorded in this study was only 25 %. Root sampling from individually dissected biopores confirmed that roots did not predominantly grow in biopores. Results suggest that roots can use biopores as preferred pathways for growth through rather compact soil layers, whereas they can possibly leave the biopore and re-enter the bulk soil in deeper, less compact layers.     

Bremia lactucae populations on cultivated lettuce originate from prickly lettuce and are interconnected with the wild pathosystem

European Journal of Plant Pathology - Maize rough dwarf disease (MRDD) is one of the most important viral diseases around the world. Rice black-streaked dwarf virus (RBSDV) and maize rough dwarf...     

Towards sustainable performance of urban horticulture: ten challenging fields of action for modern integrated pest management in cities

Journal of Plant Diseases and Protection - We identified ten current key challenges for plant protection in cities each of them belonging to a specific field of action of IPM in urban horticulture...     

Effect of medium hydrostatic pressure on the properties of wheat flour main biopolymers

In our work, the effect of medium hydrostatic pressure on the properties of wheat flour's main ingredients, starch and proteins, is presented and discussed. The symbiotic effect of the different constituents via size exclusion chromatography, water binding, gelatinization experiments as well as atomic force microscopy measurements and X-ray diffraction is elucidated. From results of size exclusion chromatography and protein content analysis, prolamin fractions seemed to be most sensitive to pressure. Hydrostatic pressure, however, had a significant influence on the amount of bound water and gelatinization enthalpy, especially at moderate pressures and higher temperatures. In this case, an optimal interaction between macromolecules and water occurs. This was also confirmed by atomic force microscopy images and X-ray diffraction patterns. Amorphous and crystalline regions of starch granules were modified, depending on pressure and temperature. At medium pressure (200 MPa), water was pressed into the starch cavities remaining there, whereas higher pressure (600 MPa) led to complete flattening of the surface. With X-ray diffraction, it was shown that medium pressure had nearly no effect on molecular structure, whereas higher pressure caused thermal-like molecular modifications.